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http://www.mediawiki.org/wiki/Extension_talk:MultiBoilerplate#noinclude_included

MultiBoilerplate fails to match <noinclude> and <includeonly> if the closing tag is not in the same wikitext line.

I can't provide a clean patch because I'm already using a patched version of MultiBoilerplate (see my other bugreports), therefore I'm including a pseudo-patch ;-)

--- MultiBoilerplate.php        (Revision 71216)
+++ MultiBoilerplate.php        (Arbeitskopie)
@@ -140,2 +140,2 @@
-               $content = preg_replace( '#<noinclude>(.*?)</noinclude>#', '', $content );
-               $content = preg_replace( '#<includeonly>(.*?)</includeonly>#', '$1', $content );
+               $content = preg_replace( '#<noinclude>(.*?)</noinclude>#ims', '', $content );
+               $content = preg_replace( '#<includeonly>(.*?)</includeonly>#ims', '$1', $content );

The difference is the additional 'ims' in both search patterns.